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An update - and some very bad

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In reply to Unresponsive Death of Recursive Loop End (2-ports):

An update - and some very bad news for me! I moved my workflow back to KNIME 2.12.1 and had it running on a different machine hoping that I could at least get some data. But I hit exactly the same problem at exactly the same point in my workflow. This time the crawling stopped after a bit more than 2000 iterations but that's still less than halfway.

The log file shows exactly the same as before:

ERROR End IF               0:1384:1115:1110 Caught "ConcurrentModificationException": null
ERROR Row Filter           0:1384:1098:1176:735 Configure failed (IllegalArgumentException): RowNumberFilter: range start is less than 0.
ERROR Row Filter           0:1384:1098:1176:735 Configure failed (IllegalArgumentException): RowNumberFilter: range start is less than 0.
ERROR Row Filter           0:1384:1098:1176:735 Configure failed (IllegalArgumentException): RowNumberFilter: range start is less than 0.
ERROR Row Filter           0:1384:1098:1176:735 Configure failed (IllegalArgumentException): RowNumberFilter: range start is less than 0.

This time I kept in the nuisance errors (last four lines of the log file) but I believe these are irrelevant to the problem (they are caused by a Row Filter which gets a table of data before it gets the FlowVariable telling it which rows to filter - a natural condition that shouldn't trigger an error).

The lights on the workflow are also exactly as before - with the right MetaNode ticked finished and the left MetaNode showing green lights but a running arrow.

I've saved the log file (ERROR level only) and I've taken SVG snapshots of everything as it was in the final state if anybody wishes to take a look - but all I can see are green lights and inactive branches.

The last trick up my sleeve is to replace the End IF node with a Case Switch Data (End) node. But if that doesn't work then I am finished.

Really hoping somebody has a solution to this problem!


Reviewed this again with the

Hi Mark, the Mac install

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In reply to Mac Install:

Hi Mark,

the Mac install files are all dmg images. Could it be, that you downloaded a Linux version?

Are you asking if it is

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In reply to Project:

Are you asking if it is enough to start in three weeks? I used to teach myself and know students tend to start a little late.

My advice is, start now. The learning curve of KNIME is steep but if you are done within a week you have three good weeks to follow.

Hi,  I have started it but

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In reply to Project:

Hi, 

I have started it but i'm asking if three weeks would be enough to complete the workflow? I didnt want to leave it late but other work got in the way so I feel like am stuck with it and am not sure whether 3 weeks is enough to complete the workflow.

Thank you

Another update - and finally

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In reply to Unresponsive Death of Recursive Loop End (2-ports):

Another update - and finally some better news. The replacement of the End IF node with the Case Switch Data (End) node got me past step 2 of my crawling (12 hours later my crawler is still working on steps 3 and 4). I'm frankly surprised as I would have thought the two nodes would have been built off a very similar codebase. It's also not certain that this is a real fix or if it is just a coincidence - or even if the End IF node was really part of the problem.

But I would encourage the core-KNIME folks to take a note of this issue as it touches on several of the fundamental principles of KNIME:

(a) KNIME aims to offer a robust multicore platform

(b) KNIME aims to provide flexible workflow control

(c) KNIME should be aiming for non-stop operation and "three nines" availability (if not five nines)

I'll continue to keep you updated as this issue evolves.

anyone else experienced any

Yes - don't know how that

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In reply to Mac Install:

Yes - don't know how that happend! I was being very thick...;)

 

Thanks!

Mark


Hi Chistian, Any new software

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In reply to Tess4J node - Execute failed: Invalid memory access:

Hi Chistian,

Any new software update? or we do one need to adjust the software 

"Found the problem. Apparently the URL of the nightly build changed. It was tech.knime.org/update but appears to be update.knime.org/ now."

kind regards

Bassam

Hi Philipp Your example

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In reply to Selenium nodes: Find and open subpages of a known web URL via term search:

Hi Philipp

Your example helped me with the workflow. Thanks!

I attached my workflow to this post. It is an intersting use case for your selenium nodes.The idea is to find  conferences about the CRISPR-Cas technology (gene editing) with a high number of speakers that belong to the top scientists in this area.

This workflow uses your selenium nodes as well as the text processing plugin. The list with the top scientist was generated in a separate workflow - in this example I show how this works in principle with 4 top scientists.

(The only thing that I do not like are the last three loops that I use. I use these because I browse to the main pages of the conferences and then try to find subpages with the term "speaker" if available.  If I only use one loop and such a subpage is not available, I will also loose the main page in this loop. Maybe there is a better solution?)

 

Best,

Frank

 

Trying to find the MOE nodes

Hi Rufus, can you ellaborate

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In reply to Errors executing CellProfiler:

Hi Rufus,

can you ellaborate a bit more on your setup? Which KNIME and KNIME Image Processing version? Which CellProfiler version? Did you set the path to CellProfiler in the KNIME propreties?

 

Thanks and happy Easter,

Christian

Hi Bhassan, I think the

This looks like a perfect

Hi thor thank you for the

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In reply to Replace a string in Java based on a column:

Hi thor thank you for the help, but I applied that node and got a lot of missing values "?".

The rule that I applied was:

$REF C$ = "REPLACE"=>$COLUMN B$

and used the option Replace Column "COLUMN A"

and this is the result:

ROW IDCOLUMN ACOLUMN BREF CNEW COLUMN A
1OLD VALUENEW VALUEREPLACENEW VALUE
2SAME VALUESAME VALUENOT REPLACE?
3OLD VALUENEW VALUEREPLACENEW VALUE
4SAME VALUESAME VALUENOT REPLACE?
5OLD VALUENEW VALUEREPLACENEW VALUE

Means that when REF C does not meet the condition replaces a "?" in column A.

Is there another option?

Thank you

 

 

 


It seems you want to pivot

You should also add $REF C$ =

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In reply to Replace a string in Java based on a column:

You should also add $REF C$ = "NOT REPLACE"=>$COLUMN A$, so the rules should look like this:

$REF C$ = "REPLACE"=>$COLUMN B$
$REF C$ = "NOT REPLACE"=>$COLUMN A$

Cheers, gabor

PS: in this case the order of rules does not matter, you could add the new rule before the other one. In case you prefer the results to be in NEW COLUMN A, uncheck the replace column option.

Hi Thor I made a change in

Hello ubibi1, There are

Hello roblake44, "?" stands

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In reply to Node Prediction Fusion:

Hello roblake44,

"?" stands for a missing value. Probably the reason is that you did not specify the classes and the confidence of the predictors.

Maybe this short introduction helps you: What's new in KNIME 3.1.

If not please upload a screenshot of the configuration dialog or even better: a sample workflow demonstrating your problem.

Best,
Ferry

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